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Select item 41827391.

Selection Pressure in Alternative Reading Frames

Katharina Mir, Steffen Schober

PLoS One. 2014; 9(10): e108768. Published online 2014 Oct 1. doi: 10.1371/journal.pone.0108768

PMCID:: PMC4182739

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Select item 81958662.

Non-canonical open reading frames encode functional proteins essential for cancer cell survival

John R. Prensner, Oana M. Enache, Victor Luria, Karsten Krug, Karl R. Clauser, Joshua M. Dempster, Amir Karger, Li Wang, Karolina Stumbraite, Vickie M. Wang, Ginevra Botta, Nicholas J. Lyons, Amy Goodale, Zohra Kalani, Briana Fritchman, Adam Brown, Douglas Alan, Thomas Green, Xiaoping Yang, Jacob D. Jaffe, Jennifer A. Roth, Federica Piccioni, Marc W. Kirschner, Zhe Ji, David E. Root, Todd R. Golub

Nat Biotechnol. Author manuscript; available in PMC 2021 Dec 1.

Published in final edited form as: Nat Biotechnol. 2021 Jun; 39(6): 697–704. Published online 2021 Jan 28. doi: 10.1038/s41587-020-00806-2

PMCID:: PMC8195866

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Select item 36605183.

The restricted D_H gene reading frame usage in the expressed human antibody repertoire is selected based on their amino acid content

Jennifer Benichou, Jacob Glanville, Eline Luning Prak, Roy Azran, Tracy C. Kuo, Jaume Pons, Cindy Desmarais, Lea Tsaban, Yoram Louzoun

J Immunol. Author manuscript; available in PMC 2014 Jun 1.

Published in final edited form as: J Immunol. 2013 Jun 1; 190(11): 5567–5577. Published online 2013 Apr 29. doi: 10.4049/jimmunol.1201929

PMCID:: PMC3660518

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Select item 101676804.

OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases

Noé Guilloy, Marie A. Brunet, Sébastien Leblanc, Jean-François Jacques, Marie-Pierre Hardy, Grégory Ehx, Joël Lanoix, Pierre Thibault, Claude Perreault, Xavier Roucou

J Proteome Res. 2023 May 5; 22(5): 1492–1500. Published online 2023 Mar 24. doi: 10.1021/acs.jproteome.3c00054

PMCID:: PMC10167680

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Select item 48587735.

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae

Matthew S. Rich, Celia Payen, Alan F. Rubin, Giang T. Ong, Monica R. Sanchez, Nozomu Yachie, Maitreya J. Dunham, Stanley Fields

Genetics. 2016 May; 203(1): 191–202. Published online 2016 Mar 1. doi: 10.1534/genetics.116.188037

PMCID:: PMC4858773

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Select item 82768636.

Dysnumeria in Sign Language: Impaired Construction of the Decimal Structure in Reading Multidigit Numbers in a Deaf ISL Signer

Naama Friedmann, Neta Haluts, Doron Levy

Front Psychol. 2021; 12: 649109. Published online 2021 Jun 29. doi: 10.3389/fpsyg.2021.649109

PMCID:: PMC8276863

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Role of ribosome recycling factor in natural termination and translational coupling as a ribosome releasing factor

Yoshio Inokuchi, Fabio Quaglia, Akikazu Hirashima, Yoshihiro Yamamoto, Hideko Kaji, Akira Kaji

PLoS One. 2023; 18(2): e0282091. Published online 2023 Feb 24. doi: 10.1371/journal.pone.0282091

PMCID:: PMC9955659

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Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

Sophie Breton, Hélène Doucet Beaupré, Donald T. Stewart, Helen Piontkivska, Moumita Karmakar, Arthur E. Bogan, Pierre U. Blier, Walter R. Hoeh

Genetics. 2009 Dec; 183(4): 1575–1589. doi: 10.1534/genetics.109.110700

PMCID:: PMC2787441

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Select item 217219.

Structural analysis of the nurse shark (new) antigen receptor (NAR): Molecular convergence of NAR and unusual mammalian immunoglobulins

Kenneth H. Roux, Andrew S. Greenberg, Lesley Greene, Lioudmila Strelets, David Avila, E. Churchill McKinney, Martin F. Flajnik

Proc Natl Acad Sci U S A. 1998 Sep 29; 95(20): 11804–11809. doi: 10.1073/pnas.95.20.11804

PMCID:: PMC21721

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Zm908p11, encoded by a short open reading frame (sORF) gene, functions in pollen tube growth as a profilin ligand in maize

Xue Dong, Dongxue Wang, Peng Liu, Chengxia Li, Qian Zhao, Dengyun Zhu, Jingjuan Yu

J Exp Bot. 2013 May; 64(8): 2359–2372. Published online 2013 May 15. doi: 10.1093/jxb/ert093

PMCID:: PMC3654424

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Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

John F. Atkins, Gary Loughran, Pramod R. Bhatt, Andrew E. Firth, Pavel V. Baranov

Nucleic Acids Res. 2016 Sep 6; 44(15): 7007–7078. Published online 2016 Jul 19. doi: 10.1093/nar/gkw530

PMCID:: PMC5009743

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Select item 265234112.

An Upstream Open Reading Frame Regulates Translation of GADD34 during Cellular Stresses That Induce eIF2α Phosphorylation

Yun-Young Lee, Randal C. Cevallos, Eric Jan

J Biol Chem. 2009 Mar 13; 284(11): 6661–6673. doi: 10.1074/jbc.M806735200

PMCID:: PMC2652341

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Select item 860281813.

Poorly Conserved P15 Proteins of Cileviruses Retain Elements of Common Ancestry and Putative Functionality: A Theoretical Assessment on the Evolution of Cilevirus Genomes

Pedro L. Ramos-González, Tirso Pons, Camila Chabi-Jesus, Gabriella Dias Arena, Juliana Freitas-Astua

Front Plant Sci. 2021; 12: 771983. Published online 2021 Nov 5. doi: 10.3389/fpls.2021.771983

PMCID:: PMC8602818

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Select item 403623514.

A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining

Sarah A. Slavoff, Jinho Heo, Bogdan A. Budnik, Leslyn A. Hanakahi, Alan Saghatelian

J Biol Chem. 2014 Apr 18; 289(16): 10950–10957. Published online 2014 Mar 7. doi: 10.1074/jbc.C113.533968

PMCID:: PMC4036235

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Select item 994999615.

HexSE: Simulating evolution in overlapping reading frames

Laura Muñoz-Baena, Kaitlyn E Wade, Art F Y Poon

Virus Evol. 2023; 9(1): vead009. Published online 2023 Feb 23. doi: 10.1093/ve/vead009

PMCID:: PMC9949996

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Select item 668166816.

Influenza A Virus Infection Induces Viral and Cellular Defective Ribosomal Products Encoded by Alternative Reading Frames

Damien J. Zanker, Sara Oveissi, David C. Tscharke, Mubing Duan, Siyuan Wan, Xiaomu Zhang, Kun Xiao, Nicole A. Mifsud, James Gibbs, Lenny Izzard, Daniel Dlugolenski, Pierre Faou, Karen L. Laurie, Nathalie Vigneron, Ian G. Barr, John Stambas, Benoît J. Van den Eynde, Jack R. Bennink, Jonathan W. Yewdell, Weisan Chen

J Immunol. Author manuscript; available in PMC 2020 Jun 15.

Published in final edited form as: J Immunol. 2019 Jun 15; 202(12): 3370–3380. Published online 2019 May 15. doi: 10.4049/jimmunol.1900070

PMCID:: PMC6681668

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Select item 942645017.

Discovery of Unannotated Small Open Reading Frames in Streptococcus pneumoniae D39 Involved in Quorum Sensing and Virulence Using Ribosome Profiling

Irina Laczkovich, Kyle Mangano, Xinhao Shao, Adam J. Hockenberry, Yu Gao, Alexander Mankin, Nora Vázquez-Laslop, Michael J. Federle

mBio. 2022 Jul-Aug; 13(4): e01247-22. Published online 2022 Jul 19. doi: 10.1128/mbio.01247-22

PMCID:: PMC9426450

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Select item 507447918.

MUC1-ARF—A Novel MUC1 Protein That Resides in the Nucleus and Is Expressed by Alternate Reading Frame Translation of MUC1 mRNA

Michael Chalick, Oded Jacobi, Edward Pichinuk, Christian Garbar, Armand Bensussan, Alan Meeker, Ravit Ziv, Tania Zehavi, Nechama I. Smorodinsky, John Hilkens, Franz-Georg Hanisch, Daniel B. Rubinstein, Daniel H. Wreschner

PLoS One. 2016; 11(10): e0165031. Published online 2016 Oct 21. doi: 10.1371/journal.pone.0165031

PMCID:: PMC5074479

Article PDF–4.9M

Select item 929600519.

Upstream open reading frames control PLK4 translation and centriole duplication in primordial germ cells

Thao P. Phan, Christina A. Boatwright, Chelsea G. Drown, Marnie W. Skinner, Margaret A. Strong, Philip W. Jordan, Andrew J. Holland

Genes Dev. 2022 Jun 1; 36(11-12): 718–736. doi: 10.1101/gad.349604.122

PMCID:: PMC9296005

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Select item 864999420.

Change in Rhetoric but not in Action? Framing of the Ethical Issue of Modern Slavery in a UK Sector at High Risk of Labor Exploitation

Gabriela Gutierrez-Huerter O, Stefan Gold, Alexander Trautrims

J Bus Ethics. 2023; 182(1): 35–58. Published online 2021 Dec 7. doi: 10.1007/s10551-021-05013-w

PMCID:: PMC8649994

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PMC Images search for sign frame

Figure 2

Long plug crossing the first bifurcation: Stage , frame #57. Event A, frame 74. Stage , frame ##76. Event B, frame #80. Stage , frame #93. Event C, frame #104. Stage , frame #106. Event D, frame #113. Stage , frame #122. Event E, frame #137. Stage , frame #141. Event F, frame #143. Stage , frame #152. Images are captured at 60 frames per second. See text for details. Bottom-right: Illustration of the condition on contact angle θ and branching half-angle α that controls the sign of the interface curvature during stage ; when , the curvature is nearly zero.

Behavior of liquid plugs at bifurcations in a microfluidic tree network

Biomicrofluidics. 2012 Sep;6(3):034105.
Figure 5

Visualization of the two parts of the construction sign. In the first column, we show a construction sign image. In the second column, we denote the board and frame regions with green and red, respectively.

Content Swapping: A New Image Synthesis for Construction Sign Detection in Autonomous Vehicles

Sensors (Basel). 2022 May;22(9):3494.
Figure 9

Keyframes of Chinese Sign Language word “Heavy”. Below the picture are the frame number and the values of image entropy. For example, 4-6.476 means the frame number is 4, and the image entropy is 6.476.

An Attention-Enhanced Multi-Scale and Dual Sign Language Recognition Network Based on a Graph Convolution Network

Sensors (Basel). 2021 Feb;21(4):1120.
Figure 3

Comparisons between Bayesian frame and sign test. (A) The power of sign test under the sample size of 5, 8, 10, and 12. (B) The relationship between expectation of posterior probability and real probability used to generate simulation data under the sample size of 5, 8, 10, and 12. (C) Bar plot for comparison between oncometabolites detected by Bayesian frame and sign test for blood samples. (D) Bar plot for comparison between oncometabolites detected by Bayesian frame and sign test for tissue samples.

Discovery of Synergistic Drug Combinations for Colorectal Cancer Driven by Tumor Barcode Derived from Metabolomics “Big Data”

Metabolites. 2022 Jun;12(6):494.